United States of America (USA)

1 December 2019 - 30 November 2020

Subject/journal group: All

The table to the right includes counts of all research outputs for United States of America (USA) published between 1 December 2019 - 30 November 2020 which are tracked by the Nature Index.

Hover over the donut graph to view the FC output for each subject. Below, the same research outputs are grouped by subject. Click on the subject to drill-down into a list of articles organized by journal, and then by title.

Note: Articles may be assigned to more than one subject area.

Count Share
28986 20575.61

Outputs by subject (FC)

Subject Count Share
Life Sciences 12951 9608.83
113 68.86
92 74.32
263 209.84
286 222.26
98 73.98
93 64.78
102 81.37
1 1
290 206.53
119 97.31
70 44.50
1 0.44
72 61.25
98 69.18
Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)
2020-11-25
1
Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules
2020-11-25
1
Predictive modeling of single-cell DNA methylome data enhances integration with transcriptome data
2020-11-20
1
The origin and evolution of a distinct mechanism of transcription initiation in yeasts
2020-11-20
1
Greater strength of selection and higher proportion of beneficial amino acid changing mutations in humans compared to mice and Drosophila melanogaster
2020-11-18
0.46
MAnorm2 for quantitatively comparing groups of ChIP-seq samples
2020-11-18
0.25
Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages
2020-11-18
1
Predicting unrecognized enhancer-mediated genome topology by an ensemble machine learning model
2020-11-12
0.58
Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally-occurring F1 hybrids
2020-11-03
0.05
Global regulatory features of alternative splicing across tissues and within the nervous system of C. elegans
2020-10-30
0.29
Complex mosaic structural variations in human fetal brains
2020-10-29
0.87
Identification of bona fide B2 SINE retrotransposon transcription through single-nucleus RNA-seq of the mouse hippocampus
2020-10-29
0.86
Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City Region
2020-10-22
0.93
Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution
2020-10-22
0.33
Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division
2020-10-15
0.48
Ultrafast and scalable variant annotation and prioritization with big functional genomics data
2020-10-15
0.17
Widespread intron retention impairs protein homeostasis in C9orf72 ALS brains
2020-10-14
1
Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response
2020-10-08
0.19
An optogenetic switch for the Set2 methyltransferase provides evidence for transcription-dependent and -independent dynamics of H3K36 methylation
2020-10-05
1
Genome variation and population structure among 1142 mosquitoes of the African malaria vector species Anopheles gambiae and Anopheles coluzzii
2020-09-28
0.14
Identification of determinants of differential chromatin accessibility through a massively parallel genome-integrated reporter assay
2020-09-24
0.93
Sex differences in human adipose tissue gene expression and genetic regulation involve adipogenesis
2020-09-23
1
PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments
2020-09-21
1
V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s
2020-09-18
1
Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
2020-09-04
1
High-throughput single-cell functional elucidation of neurodevelopmental disease–associated genes reveals convergent mechanisms altering neuronal differentiation
2020-09-04
1
Reconstruction of clone- and haplotype-specific cancer genome karyotypes from bulk tumor samples
2020-09-04
1
The Nubeam reference-free approach to analyze metagenomic sequencing reads
2020-09-03
1
Pooled analysis of radiation hybrids identifies loci for growth and drug action in mammalian cells
2020-09-02
1
Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma
2020-08-20
0.13
Detection of simple and complex de novo mutations with multiple reference sequences
2020-08-19
0.27
Xylem systems genetics analysis reveals a key regulator of lignin biosynthesis in Populus deltoides
2020-08-19
1
A pedigree-based prediction model identifies carriers of deleterious de novo mutations in families with Li-Fraumeni syndrome
2020-08-18
1
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
2020-08-14
1
Somatic structural variation targets neurodevelopmental genes and identifies SHANK2 as a tumor suppressor in neuroblastoma
2020-08-13
1
Diploid genome architecture revealed by multi-omic data of hybrid mice
2020-08-05
0.38
HDA6 dependent chromatin deacetylation orchestrates mRNA polyadenylation
2020-08-05
0.14
PR-DUB maintains the expression of critical genes through FOXK1/2- and ASXL1/2/3-dependent recruitment to chromatin and H2AK119ub1 deubiquitination
2020-08-03
0.29
Cross-species analysis of enhancer logic using deep learning
2020-07-30
0.16
Comparative transcriptomics of primary cells in vertebrates
2020-07-27
0.04
Functional annotation of human long noncoding RNAs via molecular phenotyping
2020-07-27
0.05
Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences
2020-07-23
0.17
Parallel bimodal single-cell sequencing of transcriptome and chromatin accessibility
2020-07-22
0.15
TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence
2020-07-06
1
Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations
2020-07-02
1
A limited set of transcriptional programs define major cell types
2020-07-01
0.52
Coexpression enrichment analysis at the single-cell level reveals convergent defects in neural progenitor cells and their cell-type transitions in neurodevelopmental disorders
2020-06-18
0.88
The evolution of sex-biased gene expression in the Drosophila brain
2020-06-18
1
A long-read RNA-seq approach to identify novel transcripts of very large genes
2020-06-01
1
Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq
2020-06-01
1
Single-cell analysis of human embryos reveals diverse patterns of aneuploidy and mosaicism
2020-06-01
1
Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information
2020-06-01
0.97
Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability
2020-05-27
1
Quantitative analysis of Y-Chromosome gene expression across 36 human tissues
2020-05-27
1
Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle
2020-05-01
0.69
Determining the impact of uncharacterized inversions in the human genome by droplet digital PCR
2020-05-01
0.20
MEDEA: analysis of transcription factor binding motifs in accessible chromatin
2020-05-01
1
Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains
2020-05-01
0.05
Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology
2020-04-21
0.36
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis
2020-04-20
1
Complete characterization of the human immune cell transcriptome using accurate full-length cDNA sequencing
2020-04-20
1
Arabidopsis retrotransposon virus-like particles and their regulation by epigenetically activated small RNA
2020-04-17
1
Leveraging mouse chromatin data for heritability enrichment informs common disease architecture and reveals cortical layer contributions to schizophrenia
2020-04-17
1
Dynamic effects of interacting genes underlying rice flowering-time phenotypic plasticity and global adaptation
2020-04-16
0.75
Intragenic repeat expansion in the cell wall protein gene HPF1 controls yeast chronological aging
2020-04-10
0.18
Rapid evolution of piRNA-mediated silencing of an invading transposable element was driven by abundant de novo mutations
2020-04-01
1
Inhibition of transcription leads to rewiring of locus-specific chromatin proteomes
2020-03-18
0.22
Time course regulatory analysis based on paired expression and chromatin accessibility data
2020-03-18
0.80
RETrace: simultaneous retrospective lineage tracing and methylation profiling of single cells
2020-03-03
1
An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis
2020-03-01
0.88
Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals
2020-03-01
1
Gene expression networks in the Drosophila Genetic Reference Panel
2020-03-01
0.92
Genome-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism
2020-03-01
0.22
Genomic loci susceptible to systematic sequencing bias in clinical whole genomes
2020-03-01
0.01
Human auditory ossicles as an alternative optimal source of ancient DNA
2020-03-01
0.37
Identification of FMR1-regulated molecular networks in human neurodevelopment
2020-03-01
1
Integrated annotations and analyses of small RNA–producing loci from 47 diverse plants
2020-03-01
1
Rearrangement of macronucleus chromosomes correspond to TAD-like structures of micronucleus chromosomes in Tetrahymena thermophila
2020-03-01
0.13
Recounting the FANTOM CAGE–Associated Transcriptome
2020-02-20
0.50
Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities
2020-02-19
0.91
Dual threshold optimization and network inference reveal convergent evidence from TF binding locations and TF perturbation responses
2020-02-14
1
A time-resolved multi-omic atlas of the developing mouse liver
2020-02-12
0.11
Alternative polyadenylation drives oncogenic gene expression in pancreatic ductal adenocarcinoma
2020-02-06
0.88
The full-length transcriptome of C. elegans using direct RNA sequencing
2020-02-05
1
Organ level protein networks as a reference for the host effects of the microbiome
2020-01-28
0.94
SHARP: hyper-fast and accurate processing of single-cell RNA-seq data via ensemble random projection
2020-01-28
0.67
netNMF-sc: leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis
2020-01-28
1
Ancestry-agnostic estimation of DNA sample contamination from sequence reads
2020-01-24
1
A HOTAIR regulatory element modulates glioma cell sensitivity to temozolomide through long-range regulation of multiple target genes
2020-01-17
0.14
A comparison of gene expression and DNA methylation patterns across tissues and species
2020-01-17
0.63
MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome
2020-01-06
1
Genome-wide redistribution of 24-nt siRNAs in rice gametes
2020-01-02
1
Asymmetric repair of UV damage in nucleosomes imposes a DNA strand polarity on somatic mutations in skin cancer
2019-12-23
1
Identification of pathogenic variant enriched regions across genes and gene families
2019-12-23
0.46
Predicting transfer RNA gene activity from sequence and genome context
2019-12-19
1
Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation
2019-12-18
1
Heterodimerization of TFAP2 pioneer factors drives epigenomic remodeling during neural crest specification
2019-12-17
1
A genome-wide long noncoding RNA CRISPRi screen identifies PRANCR as a novel regulator of epidermal homeostasis
2019-12-04
0.50
88 68.97
789 660.54
139 109.68
370 282.30
123 83.23
416 350.22
180 140.73
162 112.95
477 328.90
99 78.77
72 51.49
109 84.90
2186 1421.72
92 55.28
1 0.83
78 51.61
153 105.50
74 60.03
108 85.85
81 64.61
213 182.14
156 106.03
284 216.28
1922 1480.98
265 182.56
328 233.82
699 499.53
217 169.33
99 47.48
118 85.79
71 40.81
1084 890.33
Earth & Environmental Sciences 4341 2853.57
Chemistry 7235 5250.77
Physical Sciences 8259 5364.59

1 December 2019 - 30 November 2020

View the connected world of international research collaboration. Visualize collaborations by subject or region.

Collaborations between countries

Percentage of collaboration by Share

Hover over the graph to view the percentage of collaboration.

Top 10 collaborators by Share

  • United States of America (USA)
  1. China (4420.77)
    2106.75
    2314.03
  2. 1144.34
    831.17
  3. Germany (1914.97)
    1082.34
    832.63
  4. Canada (1205.80)
    753.10
    452.71
  5. France (1078.91)
    656.65
    422.26
  6. Japan (974.94)
    598.68
    376.26
  7. Australia (712.66)
    427.56
    285.10
  8. Switzerland (698.47)
    414.10
    284.37
  9. South Korea (697.43)
    420.77
    276.66
  10. Italy (582.81)
    354.79
    228.01

Collaboration is determined by the combined fractional count (Share) of United States of America (USA) and the collaborating country.

Top 10 institutions from United States of America (USA)

Institution Count Share
1. Harvard University 2535 914
2. Stanford University 1694 647.18
3. Massachusetts Institute of Technology (MIT) 1828 528.46
4. National Institutes of Health (NIH) 1085 404.29
5. University of California, Berkeley (UC Berkeley) 1297 395.84
6. University of Michigan (U-M) 1010 391.33
7. Yale University 987 350.79
8. University of California, San Diego (UC San Diego) 1003 342.66
9. Columbia University in the City of New York (CU) 1027 327.89
10. University of California, Los Angeles (UCLA) 1114 327.29

Enhanced profiles

Get your institution here

Return to country/territory outputs