Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Journal:
Nature Communications
Published:
DOI:
10.1038/s41467-021-23143-7
Affiliations:
216
Authors:
491
Institutions Authors Share
RIKEN Center for Life Science Technologies (CLST), Japan
52.500000
52.500000
52.500000
52.500000
52.500000
52.500000
0.11
RIKEN Center for Integrative Medical Sciences (IMS), Japan
32.366667
32.366667
32.366667
32.366667
0.07
RIKEN Omics Science Center (OSC), Japan
28.166667
28.166667
28.166667
0.06
The University of Edinburgh, United Kingdom (UK)
18.000000
18.000000
0.04
The University of Tokyo (UTokyo), Japan
16.000000
16.000000
0.03
University of Copenhagen (UCPH), Denmark
13.333333
13.333333
0.03
Juntendo University, Japan
13.000000
13.000000
0.03
King Abdullah University of Science and Technology (KAUST), Saudi Arabia
11.500000
11.500000
0.02
Osaka University, Japan
9.000000
0.02
RIKEN Preventive Medicine and Diagnosis Innovation Program (PMI), Japan
8.500000
0.02
Tohoku University, Japan
8.000000
0.02
Science for Life Laboratory (SciLifeLab), Sweden
7.833333
0.02
Leiden University Medical Center (LUMC), Netherlands
7.000000
0.01
Max Delbrück Center for Molecular Medicine (MDC), Germany
7.000000
0.01
Karolinska Institute (KI), Sweden
6.333333
0.01
Harvard University, United States of America (USA)
6.250000
0.01
The University of Queensland (UQ), Australia
6.000000
0.01
MRC Institute of Genetics and Molecular Medicine (IGMM), United Kingdom (UK)
6.000000
0.01
The University of British Columbia (UBC), Canada
5.500000
0.01
Interuniversity Consortium for Biotechnology (CIB), Italy
5.500000
0.01
RIKEN Center for Developmental Biology (CDB), Japan
5.333333
0.01
Child and Family Research Institute (CFRI), Canada
5.166667
0.01
Centre for Genomic Regulation (CRG), BIST, Spain
5.000000
0.01
Bioinformatics Institute (BII), A*STAR, Singapore
5.000000
0.01
Department of Information Technology and Human Factors (DITHF), AIST, Japan
4.666667
0.01
Columbia University Irving Medical Center (CUIMC), CU, United States of America (USA)
4.500000
0.01
Saitama Medical University (SMU), Japan
4.500000
0.01
McGill University, Canada
4.500000
0.01
Harry Perkins Institute of Medical Research (HPIMR), Australia
4.250000
0.01
Queen Elizabeth II Medical Centre (QEIIMC), UWA, Australia
4.250000
0.01
Bruno Kessler Foundation (FBK), Italy
4.000000
0.01
Technical University of Munich (TUM), Germany
4.000000
0.01
Norwegian University of Science and Technology (NTNU), Norway
4.000000
0.01
Karolinska University Hospital, Sweden
4.000000
0.01
Senri Kinran University, Japan
4.000000
0.01
National Institute of Genetics (NIG), ROIS, Japan
4.000000
0.01
The Jackson Laboratory (JAX), United States of America (USA)
4.000000
0.01
University of Udine (UNIUD), Italy
3.500000
0.01
University of California, Berkeley (UC Berkeley), United States of America (USA)
3.500000
0.01
Swiss Institute of Bioinformatics (SIB), Switzerland
3.500000
0.01
University of Miami (UM), United States of America (USA)
3.000000
0.01
Juntendo University Shizuoka Hospital, Japan
3.000000
0.01
Swiss Federal Institute of Technology Zurich (ETH Zurich), Switzerland
3.000000
0.01
Vavilov Institute of General Genetics (VIGG), RAS, Russia
3.000000
0.01
DZNE Site Tübingen, Germany
3.000000
0.01
Research Organization of Information and Systems (ROIS), Japan
3.000000
0.01
University of Basel (UB), Switzerland
3.000000
0.01
Computational Biology Institute (IBC), France
2.666667
0.01
Department of Life Science and Biotechnology (DLSBT), AIST, Japan
2.500000
0.01
University of Bergen (UIB), Norway
2.500000
0.01
University Hospital of Regensburg (UKR), Germany
2.500000
0.01
University of Bristol (UoB), United Kingdom (UK)
2.500000
0.01
IRCCS Santa Lucia Foundation, Italy
2.500000
0.01
Imperial College London (ICL), United Kingdom (UK)
2.500000
0.01
Wellcome Sanger Institute, United Kingdom (UK)
2.500000
0.01
Stockholm University, Sweden
2.000000
0.00
Kanagawa Cancer Center, Japan
2.000000
0.00
RIKEN BioResource Research Center (BRC), Japan
2.000000
0.00
Massey University, New Zealand
2.000000
0.00
University of New South Wales (UNSW Sydney), Australia
2.000000
0.00
Charité - University Medicine Berlin, Germany
2.000000
0.00
Stanford University, United States of America (USA)
2.000000
0.00
The Wistar Institute, United States of America (USA)
2.000000
0.00
ICGEB Cape Town, South Africa
2.000000
0.00
University of Cape Town (UCT), South Africa
2.000000
0.00
Lawrence Berkeley National Laboratory (LBNL), United States of America (USA)
2.000000
0.00
Institute of Molecular Genetics of Montpellier (IGMM), France
2.000000
0.00
RIKEN Center for Brain Science (CBS), Japan
2.000000
0.00
Laboratory of Computational and Quantitative Biology (LCQB), IBPS, France
2.000000
0.00
Cold Spring Harbor Laboratory (CSHL), United States of America (USA)
2.000000
0.00
European Bioinformatics Institute (EMBL-EBI), United Kingdom (UK)
1.500000
0.00
Tokyo Institute of Technology (Tokyo Tech), Japan
1.500000
0.00
Keio University, Japan
1.500000
0.00
University of Regensburg (UR), Germany
1.500000
0.00
National Center for Global Health and Medicine (NCGM), Japan
1.500000
0.00
RIKEN Bioinformatics and Systems Engineering Division (BASE), Japan
1.500000
0.00
Tohoku Medical Megabank Organization (ToMMo), Tohoku University, Japan
1.500000
0.00
Sanofi, France
1.333333
0.00
Laboratory of Informatics, Robotics and Microelectronics of Montpellier (LIRMM), France
1.333333
0.00
Nagahama Institute of Bio-Science and Technology (N-BIO), Japan
1.000000
0.00
Kyoto University, Japan
1.000000
0.00
Telethon Institute of Genetics and Medicine (TIGEM), Italy
1.000000
0.00
Paracelsus Medical University - Campus Nuremberg (PMU Nuremberg), Germany
1.000000
0.00
Walter and Eliza Hall Institute of Medical Research (WEHI), Australia
1.000000
0.00
St Laurent Institute, United States of America (USA)
1.000000
0.00
Biomedical Primate Research Centre (BPRC), Netherlands
1.000000
0.00
Kyoto Prefectural University of Medicine (KPUM), Japan
1.000000
0.00
Uppsala University (UU), Sweden
1.000000
0.00
The University of Nottingham (UoN), United Kingdom (UK)
1.000000
0.00
Lund University (LU), Sweden
1.000000
0.00
Kyungpook National University (KNU), South Korea
1.000000
0.00
Wayne State University, United States of America (USA)
1.000000
0.00
Ohu University, Japan
1.000000
0.00
Albert Einstein College of Medicine (Einstein), United States of America (USA)
1.000000
0.00
Sloan Kettering Institute (SKI), MSKCC, United States of America (USA)
1.000000
0.00
The University of Melbourne (UniMelb), Australia
1.000000
0.00
Australian Infectious Diseases Research Centre (AID), Australia
1.000000
0.00
Kobe University, Japan
1.000000
0.00
Tokyo University of Pharmacy and Life Sciences (TUPLS), Japan
1.000000
0.00
University Hospital Basel (USB), UB, Switzerland
1.000000
0.00
Academic Medical Center (AMC), UvA, Netherlands
1.000000
0.00
University at Buffalo, The State University of New York (SUNY UB), United States of America (USA)
1.000000
0.00
Hubrecht Institute: Developmental Biology and Stem Cell Research, KNAW, Netherlands
1.000000
0.00
National Institute of Molecular Genetics “Romeo and Enrica Invernizzi” (INGM), Italy
1.000000
0.00
Nihon University, Japan
1.000000
0.00
University of Helsinki, Finland
1.000000
0.00
Mater Research Institute - University of Queensland (MRI-UQ), Australia
1.000000
0.00
Scuola Internazionale Superiore di Studi Avanzati (SISSA), Italy
1.000000
0.00
Kyushu University, Japan
1.000000
0.00
Boston Children's Hospital (BCH), United States of America (USA)
1.000000
0.00
TU Dresden, Germany
1.000000
0.00
Children's Hospital at Westmead (CHW), USYD, Australia
1.000000
0.00
Osaka Institute of Technology (OIT), Japan
1.000000
0.00
Rice University, United States of America (USA)
0.833333
0.00
Kazan Federal University (KFU), Russia
0.833333
0.00
The University of Western Australia (UWA), Australia
0.750000
0.00
Telethon Kids Institute, Australia
0.750000
0.00
The Systems Biology Institute, Japan
0.700000
0.00
Engelhardt Institute of Molecular Biology (EIMB), RAS, Russia
0.666667
0.00
University of Delaware (UD), United States of America (USA)
0.583333
0.00
Dana-Farber Cancer Institute (DFCI), United States of America (USA)
0.500000
0.00
Duke-NUS Medical School, Singapore
0.500000
0.00
Guy's Hospital, Guy's and St Thomas' NHS Foundation Trust, United Kingdom (UK)
0.500000
0.00
Tokyo Medical and Dental University (TMDU), Japan
0.500000
0.00
Icahn School of Medicine at Mount Sinai (ISMMS), MSHS, United States of America (USA)
0.500000
0.00
Kumamoto University, Japan
0.500000
0.00
Brown University, United States of America (USA)
0.500000
0.00
VU Amsterdam, Netherlands
0.500000
0.00
Yokohama City University (YCU), Japan
0.500000
0.00
Lomonosov Moscow State University (MSU), Russia
0.500000
0.00
Swiss Federal Institute of Technology Lausanne (EPFL), Switzerland
0.500000
0.00
Johns Hopkins University (JHU), United States of America (USA)
0.500000
0.00
RIKEN Quantitative Biology Center (QBiC), Japan
0.500000
0.00
Department of Neuroscience and Brain Technologies, IIT, Italy
0.500000
0.00
Oregon State University, United States of America (USA)
0.500000
0.00
KTH Royal Institute of Technology, Sweden
0.500000
0.00
Huaqiao University (HQU), China
0.500000
0.00
The University of Sheffield, United Kingdom (UK)
0.500000
0.00
University of Eastern Piedmont "Amedeo Avogadro" (UNIPMN), Italy
0.500000
0.00
Samfundet Folkhälsan, Finland
0.333333
0.00
Christiana Care Health System, United States of America (USA)
0.333333
0.00
Research Center of Biotechnology, RAS, Russia
0.333333
0.00
National University of Singapore (NUS), Singapore
0.333333
0.00
Waseda University, Japan
0.333333
0.00
Skolkovo Institute of Science and Technology (Skoltech), Russia
0.333333
0.00
RIKEN Advanced Center for Computing and Communication (ACCC), Japan
0.333333
0.00
AIST-Waseda University Computational Bio Big Data Open Innovation Laboratory (CBBD-OIL), Japan
0.333333
0.00
Moscow Institute of Physics and Technology - State University (MIPT), Russia
0.333333
0.00
NIH NLM National Center for Biotechnology Information (NCBI), United States of America (USA)
0.333333
0.00
Herlev University Hospital, Denmark
0.333333
0.00
Institute of Predictive and Personalized Medicine of Cancer (IMPPC), IGTP ICS, Spain
0.333333
0.00
Sony Computer Science Laboratories (Sony CSL), Japan
0.200000
0.00
Monash University, Australia
0.200000
0.00
Okinawa Institute of Science and Technology Graduate University (OIST), Japan
0.200000
0.00