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High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated -regulatory alterations

Journal: Nature Communications

Published: 2020-02-05

DOI: 10.1038/s41467-019-13885-w

Affiliations: 154

Authors: 156

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Institutions Share
BGI-Shenzhen, China 0.06
European Bioinformatics Institute (EMBL-EBI), United Kingdom (UK) 0.05
Broad Institute of MIT and Harvard, United States of America (USA) 0.05
EMBL Genome Biology Unit, Germany 0.04
China National Genebank (CNGB), China 0.04
Wellcome Trust Genome Campus, United Kingdom (UK) 0.03
Barcelona Supercomputing Center (BSC), Spain 0.03
Genome Informatics Program, OICR, Canada 0.03
UC Santa Cruz Genomics Institute, UCSC, United States of America (USA) 0.02
Dan L Duncan Comprehensive Cancer Center, United States of America (USA) 0.02
RIKEN Laboratory for Genome Sequencing Analysis, Japan 0.02
University of California, Santa Cruz (UCSC), United States of America (USA) 0.01
Cancer Research UK Cambridge Institute (CRUK-CI), University of Cambridge, United Kingdom (UK) 0.01
The University of Texas MD Anderson Cancer Center, United States of America (USA) 0.01
Berlin Institute for Medical Systems Biology (BIMSB), MDC, Germany 0.01
Harvard Medical School (HMS), United States of America (USA) 0.01
Ludwig Center at Harvard Medical School, United States of America (USA) 0.01
Harvard Department of Biomedical Informatics (DBMI), United States of America (USA) 0.01
Center for Life Sciences (CLS), PKU, China 0.01
Peking University (PKU), China 0.01
Azrieli Faculty of Medicine, BIU, Israel 0.01
Computational and Systems Biology (CSB), A*STAR, Singapore 0.01
New York Genome Center (NYGC), United States of America (USA) 0.01
Institute of Medical Science (IMSUT), UTokyo, Japan 0.01
Division of Applied Bioinformatics, DKFZ, Germany 0.01
Peter MacCallum Cancer Centre (Peter Mac), Australia 0.01
Sir Peter MacCallum Department of Oncology, UniMelb, Australia 0.01
Computational Biology Program, OICR, Canada 0.01
Department of Molecular Medicine (MOMA), AU, Denmark 0.01
Dana-Farber Cancer Institute (DFCI), United States of America (USA) 0.01
Biomedical Research Centre (CINBIO), UVIGO, Spain 0.01
USC Center for Research in Molecular Medicine and Chronic Diseases (CIMUS), Spain 0.01
USC Department of Zoology, Genetics and Physical Anthropology, Spain 0.01
Yale Department of Molecular Biophysics and Biochemistry (MBB), United States of America (USA) 0.01
University of Cambridge, United Kingdom (UK) 0.01
German Cancer Research Center in the Helmholtz Association (DKFZ), Germany 0.01
Genome Institute of Singapore (GIS), A*STAR, Singapore 0.01
Biomedical Pioneering Innovation Center (BIOPIC), PKU, China 0.01
Biotech Research and Innovation Centre (BRIC), UCPH, Denmark 0.01
Finsen Laboratory, Rigshospitalet, Denmark 0.01
Swiss Institute of Bioinformatics (SIB), Switzerland 0.01
Department of Biology (D-BIOL), ETH Zurich, Switzerland 0.01
Cancer Research Institute, BIDMC, United States of America (USA) 0.01
Department of Biochemistry, Microbiology and Immunology, uOttawa, Canada 0.01
Johns Hopkins University School of Medicine (JHUSOM), JHU, United States of America (USA) 0.01
Sidra Medical and Research Center, Qatar 0.01
Ontario Institute for Cancer Research (OICR), Canada 0.01
NIH NIEHS Genome Integrity and Structural Biology Laboratory, United States of America (USA) 0.01
Brandeis University, United States of America (USA) 0.01
Transmissible Cancer Group (TCG), University of Cambridge, United Kingdom (UK) 0.01
Department of Biomolecular Engineering (BME), UCSC, United States of America (USA) 0.01
Center for Reproductive Biology, United States of America (USA) 0.01
Institute for Molecular Bioscience (IMB), UQ, Australia 0.01
University College London (UCL), United Kingdom (UK) 0.01
NIH NIEHS Integrative Bioinformatics Support Group, United States of America (USA) 0.01
QIMR Berghofer Department of Genetics and Computational Biology, Australia 0.01
Weill Cornell Medicine (WCM), Cornell University, United States of America (USA) 0.01
Department of Computer Science (D-INFK), ETH Zurich, Switzerland 0
Computational Biology Center (cBio), MSKCC, United States of America (USA) 0
Department of Medical Oncology, DFCI, United States of America (USA) 0
German Consortium of Translational Cancer Research (DKTK), Germany 0
National Center for Tumor Diseases (NCT) Heidelberg, Germany 0
Centre for Molecular Informatics, University of Cambridge, United Kingdom (UK) 0
Department of Physiology and Biophysics, Cornell University, United States of America (USA) 0
Caryl and Israel Englander Institute for Precision Medicine (IPM), Cornell University, United States of America (USA) 0
The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine (ICB), Cornell University, United States of America (USA) 0
University Hospital Zurich (UHZ), Switzerland 0
Department of Human Genetics, UChicago, United States of America (USA) 0
Hopp Children's Cancer Center Heidelberg (KiTZ), Germany 0
RIKEN Center for Integrative Medical Sciences (IMS), Japan 0
Division of Genetics and Genomics, BCH, United States of America (USA) 0
Department of Internal Medicine, SNU, South Korea 0
Junior Research Group Pediatric Glioma Research, DKFZ, Germany 0
Queensland Centre for Medical Genomics (QCMG), UQ, Australia 0
Center for Medical Innovation (CMI), SNU, South Korea 0
Department of Cancer Biology, DFCI, United States of America (USA) 0
Korea Advanced Institute of Science and Technology (KAIST), South Korea 0
Department of Haematology, University of Cambridge, United Kingdom (UK) 0
Ben May Department for Cancer Research (BMDCR), UChicago, United States of America (USA) 0
Catalan Institution for Research and Advanced Studies (ICREA), Spain 0
Center for Cancer Research, MGH, United States of America (USA) 0
Faculty of Biosciences, Uni Heidelberg, Germany 0
Tri-Institutional MD-PhD Program, United States of America (USA) 0
School of Life Sciences, PKU, China 0
University of Glasgow, United Kingdom (UK) 0
UNC Lineberger Comprehensive Cancer Center, United States of America (USA) 0
Department of Cell and Systems Biology (CSB), U of T, Canada 0
UNC Department of Genetics, United States of America (USA) 0
Department of Biosciences and Nutrition, KI, Sweden 0
National Cancer Centre Singapore (NCCS), Singapore 0
InBIO - Research Network in Biodiversity and Evolutionary Biology, Portugal 0
Department of Molecular Genetics, U of T, Canada 0
UCSF Department of Radiation Oncology, United States of America (USA) 0
Bioinformatics Research Centre (BiRC), AU, Denmark 0
CRUK Beatson Institute for Cancer Research, United Kingdom (UK) 0
Human Genome Sequencing Center (HGSC), BCM, United States of America (USA) 0
NUS School of Computing, Singapore 0
Margaret M. and Albert B. Alkek Department of Medicine, BCM, United States of America (USA) 0
Department of Bioinformatics and Computational Biology, MD Anderson Cancer Center, United States of America (USA) 0
NUS Cancer Science Institute of Singapore (CSI), Singapore 0
Duke-NUS Cancer and Stem Cell Biology Program (CSCB), Singapore 0
SingHealth Duke-NUS Institute of Precision Medicine (PRISM), Singapore 0
Department of Pathology, UniMelb, Australia 0
Department of Medical Oncology, UniBE, Switzerland 0
Centre for Genomic Regulation (CRG), BIST, Spain 0
Federal Research Center of Pediatric Hematology, Oncology and Immunology - Dmitry Rogachev, Russia 0
A.A. Kharkevich Institute for Information Transmission Problems (IITP), RAS, Russia 0
Skolkovo Institute of Science and Technology (Skoltech), Russia 0
Institute of Medical Genetics and Applied Genomics, Uni Tübingen, Germany 0
UAB O'Neal Comprehensive Cancer Center, United States of America (USA) 0
Heidelberg Center for Personalized Oncology (DKFZ-HIPO), Germany 0
UAB Department of Epidemiology, United States of America (USA) 0
HudsonAlpha Institute for Biotechnology, United States of America (USA) 0
Pompeu Fabra University (UPF), Spain 0
Graduate Program in Quantitative and Computational Biosciences, BCM, United States of America (USA) 0
JAX Genomic Medicine, United States of America (USA) 0
The University of Melbourne (UniMelb), Australia 0
Department of Genomic Medicine, MD Anderson Cancer Center, United States of America (USA) 0
Institute of Human Genetics, Ulm University, Germany 0
Division of Computational Genomics and System Genetics, DKFZ, Germany 0
Charité Department of Urology, Germany 0
University of California, Los Angeles (UCLA), United States of America (USA) 0
Sandra and Edward Meyer Cancer Center, Cornell University, United States of America (USA) 0
School of Mathematics and Statistics, University of St Andrews, United Kingdom (UK) 0
School of Medicine, University of St Andrews, United Kingdom (UK) 0
Department of Pharmacology and Toxicology, U of T, Canada 0
Yale Interdepartmental Program in Computational Biology and Bioinformatics, United States of America (USA) 0
Yale Department of Computer Science, United States of America (USA) 0
Department of Computer Science (CS), Princeton University, United States of America (USA) 0
DKTK Partner Site Berlin, Germany 0
Computational and Systems Biology Program, MSKCC, United States of America (USA) 0
Department of Medical Biophysics, U of T, Canada 0
Korea University, South Korea 0
Institute of Molecular and Cell Biology (IMCB), A*STAR, Singapore 0
Laboratory of Cancer Epigenome, NCCS, Singapore 0

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