Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Journal: Nature Communications

Published: 2019-06-17

DOI: 10.1038/s41467-019-09799-2

Affiliations: 195

Authors: 354

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Institutions Share
Department of Bioinformatics (BiGCaT), UM, Netherlands 0.04
KAIST Department of Bio and Brain Engineering, South Korea 0.03
University of Toronto (U of T), Canada 0.03
Sage Bionetworks, United States of America (USA) 0.03
Department of Computer Science and Engineering, Korea University, South Korea 0.02
Department of Biology, University of Rome Tor Vergata, Italy 0.02
Science for Life Laboratory (SciLifeLab), Sweden 0.02
MRC Biostatistics Unit (BSU), University of Cambridge, United Kingdom (UK) 0.02
Bioinformatics Research Center (BRC), NCSU, United States of America (USA) 0.02
Division of Molecular Carcinogenesis, NKI, Netherlands 0.02
UNC Eshelman School of Pharmacy, United States of America (USA) 0.02
Centre for Molecular Informatics, University of Cambridge, United Kingdom (UK) 0.02
Institute for Molecular Medicine Finland (FIMM), Finland 0.02
AstraZeneca IMED Biotech Unit Cambridge, United Kingdom (UK) 0.02
KAUST Computational Bioscience Research Center (CBRC), Saudi Arabia 0.01
The Institute of Cancer Research (ICR), United Kingdom (UK) 0.01
Princess Margaret Cancer Centre, U of T, Canada 0.01
Yale University, United States of America (USA) 0.01
RIKEN Center for Integrative Medical Sciences (IMS), Japan 0.01
Department of Electrical and Computer Engineering, TAMU, United States of America (USA) 0.01
Informatics and Telematics Institute (ITI), CERTH, Greece 0.01
Department of Medicine, UC San Diego, United States of America (USA) 0.01
Department of Medical Information, Kongju Nationtional University, South Korea 0.01
Ghent University (UGent), Belgium 0.01
Department of Computer Science, Virginia Tech, United States of America (USA) 0.01
Stanford Department of Radiology, United States of America (USA) 0.01
Norwegian University of Science and Technology (NTNU), Norway 0.01
School of Chemical Engineering (ETSEQ), URV, Spain 0.01
Centre of Biological Engineering (CEB), UM, Portugal 0.01
Bioinformatics and Systems Biology Graduate Program, UC San Diego, United States of America (USA) 0.01
Sanford Burnham Prebys Medical Discovery Institute (SBP), United States of America (USA) 0.01
Toulouse Mathematics Institute (IMT), France 0.01
Standigm Inc., South Korea 0.01
The University of Texas Health Science Center at Houston (UTHealth), United States of America (USA) 0.01
JKU Institute of Machine Learning, Austria 0.01
The Systems Biology Institute, Japan 0.01
Leloir Institute, CONICET, Argentina 0.01
Department of Computer Science (CS), Aalto University, Finland 0.01
Department of Biomedical Sciences (BMS), CityU, China 0.01
University of Washington (UW), United States of America (USA) 0.01
Department of Medical Epidemiology and Biostatistics (MEB), KI, Sweden 0.01
IBM Thomas J. Watson Research Center, United States of America (USA) 0.01
Computational and Systems Biology (CSB), A*STAR, Singapore 0.01
Case Western Reserve University (CWRU), United States of America (USA) 0.01
University of Cambridge, United Kingdom (UK) 0.01
Carnegie Mellon University (CMU), United States of America (USA) 0.01
Bio-Synergy Research Center (BSRC), South Korea 0.01
AstraZeneca IMED Biotech Unit Waltham, MA, United States of America (USA) 0.01
Catholic University of Leuven (KU Leuven), Belgium 0.01
Data Science Section (DAS), RU, Netherlands 0.01
Weill Cornell Medicine (WCM), Cornell University, United States of America (USA) 0.01
Division of Medicinal Chemistry, VU University Amsterdam, Netherlands 0.01
Amsterdam Institute for Molecules, Medicines and Systems (AIMMS), VU University Amsterdam, Netherlands 0.01
Stanford University, United States of America (USA) 0.01
Harvard Program for Evolutionary Dynamics (PED), United States of America (USA) 0.01
Center for Statistics (CenStat), UHasselt, Belgium 0.01
Research Unit on Biomedical Informatics (GRIB), Spain 0.01
University of Illinois at Urbana-Champaign (UIUC), United States of America (USA) 0.01
Cancer Center Amsterdam (CCA), UvA, Netherlands 0.01
Indiana University School of Medicine (IUSM), United States of America (USA) 0.01
RT2 Laboratory, Curie Institute, France 0.01
University of Minnesota (UMN), United States of America (USA) 0.01
Center for Quantitative Genetics and Genomics (QGG), AU, Denmark 0.01
Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, United States of America (USA) 0.01
MTA-SE Laboratory of Molecular Physiology, Hungary 0.01
Department of Physiology, SE, Hungary 0.01
The Graduate Center of the City University of New York (CUNY Graduate Center), United States of America (USA) 0
UiO Oslo Centre for Biostatistics and Epidemiology (OCBE), Norway 0
Stanford Department of Genetics, United States of America (USA) 0
Virgen del Rocío University Hospital, Spain 0
Clinical Bioinformatics Area, FPS, Spain 0
Interuniversity Institute of Bioinformatics in Brussels (IB)², Belgium 0
Department of Chem­istry, NCSU, United States of America (USA) 0
Stanford School of Medicine, United States of America (USA) 0
UiO Department of Biostatistics, Norway 0
Institute of Health Economics and Health Care Management (IGM), HMGU, Germany 0
Department of Computer Science, University of Suwon, South Korea 0
Department of Computer Science and Statistics, Daegu University, South Korea 0
Department of Biomedical Informatics (DBMI), CU, United States of America (USA) 0
Department of Bioengineering, UW, United States of America (USA) 0
OSU Department of Biomedical Informatics (BMI), United States of America (USA) 0
University of California, San Diego (UC San Diego), United States of America (USA) 0
Department of Medicine, University of Cambridge, United Kingdom (UK) 0
Bellvitge Biomedical Research Institute (IDIBELL), Spain 0
Institute of Cancer and Genomic Sciences, UB, United Kingdom (UK) 0
Hematology Research Unit Helsinki, Finland 0
Division of Drug Discovery and Safety, LACDR, Netherlands 0
Cancer Hospital, HIPS CAS, China 0
Technical University of Munich (TUM), Germany 0
The University of British Columbia Okanagan (UBC Okanagan), Canada 0
Department of Electrical, Electronic and Computer Engineering, Gifu University, Japan 0
University of Applied Sciences for Economics and Management (FOM), Germany 0
Kyungpook National University (KNU), South Korea 0
NIH National Center for Advancing Translational Sciences (NCATS), United States of America (USA) 0
Catalan Institute of Oncology (ICO), Spain 0
Department of Medical Science Mathematics, TMDU, Japan 0
Cambridge Rindge and Latin High School (CRLS), United States of America (USA) 0
Microsoft Research Redmond, United States of America (USA) 0
Harvard University, United States of America (USA) 0
Technical University of Madrid (UPM), Spain 0
Texas Tech University (TTU), United States of America (USA) 0
University of Helsinki, Finland 0
University of Turku (UTU), Finland 0
Helsinki Institute for Information Technology (HIIT), Finland 0
Indiana University - Purdue University Indianapolis (IUPUI), United States of America (USA) 0
Bioinformatics Center, Kyoto University, Japan 0
Oxford Wellcome Trust Centre for Human Genetics, United Kingdom (UK) 0
Department of Electronic Engineering, CityU, China 0
University of Wisconsin-Madison (UW-Madison), United States of America (USA) 0
Institute of Data Science, UM, Netherlands 0
Constellation Pharmaceuticals, Inc., United States of America (USA) 0
Center for Computational Biology and Bioinformatics (CCBB), UC San Diego, United States of America (USA) 0
University of A Coruña (UDC), Spain 0
Department of Computational Medicine and Bioinformatics (DCM&B), U-M, United States of America (USA) 0
Cancer Research Center of Marseille (CRCM), France 0
Faculty of Sciences (FC), ULISBOA, Portugal 0
Al-Azhar University, Egypt 0
Max Planck Institute for Developmental Biology (MPI-EB), Germany 0
University of Oxford, United Kingdom (UK) 0
Laboratory of Structural Bioinformatics, France 0
HyperCube Institute (IHC), France 0
University of Washington Tacoma (UW Tacoma), UW, United States of America (USA) 0
Texas A&M University (TAMU), United States of America (USA) 0
Department of Computer Engineering, Ege University, Turkey 0
Centre for Genomic Regulation (CRG), BIST, Spain 0
Computer Laboratory, University of Cambridge, United Kingdom (UK) 0
Texas State University - San Marcos, United States of America (USA) 0
SAS Institute Inc., United States of America (USA) 0
Igenomix S.L., Spain 0
Owkin, Inc., United States of America (USA) 0
UiO Department of Mathematics, Norway 0
Joint BSC-CRG-IRB Research Programme in Computational Biology, Spain 0
Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology (GBCB), Virginia Tech, United States of America (USA) 0
Wellcome Sanger Institute, United Kingdom (UK) 0
King Abdullah University of Science and Technology (KAUST), Saudi Arabia 0
USC Center for Research in Molecular Medicine and Chronic Diseases (CIMUS), Spain 0
Department of Geological Sciences and Engineering, UNR, United States of America (USA) 0
Curie Institute, France 0
The Hospital for Sick Children (SickKids), U of T, Canada 0
Department of Computer Science, CUNY Hunter College, United States of America (USA) 0
Cancer GenomiCs.nl (CGC.nl), Netherlands 0
Faculty of Electrical Engineering, Mathematics and Computer Science (EEMCS), TU Delft, Netherlands 0
Joint Research Center for Computational Biomedicine (JRC-COMBINE), Germany 0
European Bioinformatics Institute (EMBL-EBI), United Kingdom (UK) 0
Institut Paoli-Calmettes (IPC), France 0
Oxford Immune Algorithmics Ltd. (OIA), United Kingdom (UK) 0
NUS Department of Computer Science, Singapore 0
Department of Genetics and Genomic Sciences, ISMMS, United States of America (USA) 0
Aix-Marseille University (AMU), France 0
KAUST Physical Science and Engineering Division (PSE), Saudi Arabia 0
Division of Environmental Health Sciences, UC Berkeley, United States of America (USA) 0
Alexandria University, Egypt 0
Division of Molecular Pathology, NKI, Netherlands 0
Bogor Agricultural University (IPB), Indonesia 0
Department of Molecular and Translational Medicine (DMMT), UNIBS, Italy 0
Department of Computer Science, ULB, Belgium 0
UiO Department of Informatics, Norway 0
Catalan Institution for Research and Advanced Studies (ICREA), Spain 0
Sheffield Institute for Translational Neuroscience (SITraN), The University of Sheffield, United Kingdom (UK) 0
School of Medicine, KU, Turkey 0
Division of Mucosal and Salivary Biology, KCL, United Kingdom (UK) 0
Skolkovo Institute of Science and Technology (Skoltech), Russia 0
A.A. Kharkevich Institute for Information Transmission Problems (IITP), RAS, Russia 0
Division of Oncogenomics, NKI, Netherlands 0
Oslo University Hospital (OUS), Norway 0
St. Olavs Hospital (Trondheim University Hospital), NTNU, Norway 0
Duke-NUS Centre for Computational Biology (CCB), Singapore 0
SingHealth Duke-NUS Institute of Precision Medicine (PRISM), Singapore 0
Nile University (NU), Egypt 0
National Research Centre (NRC), Egypt 0
Department of Obstetrics and Gynecology, WSU, United States of America (USA) 0
Department of Computer Science (CS), WSU, United States of America (USA) 0
UiO Department of Tumor Biology, Norway 0
College of Engineering (CE), KU, Turkey 0
Department of Statistics, NCSU, United States of America (USA) 0
The University of the South Pacific (USP), Fiji 0
Institute for Integrated and Intelligent Systems (IIIS), Griffith University, Australia 0
School of Public Health (SPH), SDU, China 0
School of Statistics and Management (SSM), SUFE, China 0
Institute for Computational Biomedicine, Uni Heidelberg, Germany 0
Institute of Computational Biology (ICB), HMGU, Germany 0

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